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Creators/Authors contains: "Miller, Justin"

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  1. Free, publicly-accessible full text available March 1, 2026
  2. A (PNNP)FeIIcomplex is shown to catalyze the dimerization of terminal alkynesviaa metal–ligand cooperative mechanism. 
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  3. Dehydrogenation of the ligand backbone of a bis(amido)bis(phosphine) Co complex is achieved through hydrogen atom abstraction. The new unsaturated backbone of the tetradentate ligand renders the ligand in the resulting Co complex redox-active. 
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  4. Designing realistic quantum mechanical (QM) models of enzymes is dependent on reliably discerning and modeling residues, solvents, and cofactors important in crafting the active site microenvironment. Interatomic van der Waals contacts have previously demonstrated usefulness toward designing QM-models, but their measured values (and subsequent residue importance rankings) are expected to be influenceable by subtle changes in protein structure. Using chorismate mutase as a case study, this work examines the differences in ligand-residue interatomic contacts between an x-ray crystal structure and structures from a molecular dynamics simulation. Select structures are further analyzed using symmetry adapted perturbation theory to compute ab initio ligand-residue interaction energies. The findings of this study show that ligand-residue interatomic contacts measured for an x-ray crystal structure are not predictive of active site contacts from a sampling of molecular dynamics frames. In addition, the variability in interatomic contacts among structures is not correlated with variability in interaction energies. However, the results spotlight using interaction energies to characterize and rank residue importance in future computational enzymology workflows. 
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  5. Jez, Joseph M.; Topp, Christopher N. (Ed.)
    Structural biologists rely on X-ray crystallography as the main technique for determining the three-dimensional structures of macromolecules; however, in recent years, new methods that go beyond X-ray-based technologies are broadening the selection of tools to understand molecular structure and function. Simultaneously, national facilities are developing programming tools and maintaining personnel to aid novice structural biologists in de novo structure determination. The combination of X-ray free electron lasers (XFELs) and serial femtosecond crystallography (SFX) now enable time-resolved structure determination that allows for capture of dynamic processes, such as reaction mechanism and conformational flexibility. XFEL and SFX, along with microcrystal electron diffraction (MicroED), help side-step the need for large crystals for structural studies. Moreover, advances in cryogenic electron microscopy (cryo-EM) as a tool for structure determination is revolutionizing how difficult to crystallize macromolecules and/or complexes can be visualized at the atomic scale. This review aims to provide a broad overview of these new methods and to guide readers to more in-depth literature of these methods. 
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  6. As artificially intelligent humanoids become increasingly prevalent in the home, it is imperative that we develop secure designs to guard against cyberattacks. The next evolution of AI-powered home devices, such as Alexa, is to create physical effectors to enable these devices to alter their environments. Current humanoids on the market, such as the EZ-Robot JD and NAO, are examples of artificially intelligent robots that may one day become common in home environments. If these humanoids are not designed to be safe against cybersecurity vulnerabilities, they may be used to cause harm to living spaces and possibly even the humans living in these spaces. This paper examines the cybersecurity of two humanoid robots and provides recommendations for future safe designs and protections in artificial intelligent social robots. 
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